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 | Acesso ao texto completo restrito à biblioteca da Embrapa Mandioca e Fruticultura. Para informações adicionais entre em contato com cnpmf.biblioteca@embrapa.br. |
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Registro Completo |
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Biblioteca(s): |
Embrapa Mandioca e Fruticultura. |
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Data corrente: |
17/11/2021 |
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Data da última atualização: |
19/11/2021 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
KUHN, J.; ADKINS, S.; AGWANDA, B. R.; KUBRUSLI, R. A.; ALKHOVSKY, S. V.; AMARASINGHE, G. K.; TATJANA, A.-Z.; AYLLÓN, M. A.; BAHL, J.; BALKEMA BUSCHMANN, A.; BALLINGER, M. J.; BASLER, C. F.; BAVARI, S.; BEER, M.; BEJERMAN, N.; BENNETT, A. J.; DBENTE, D. A.; BERGERON, É.; BIRD, B. H.; BLAIR, C. D.; BLASDELL, K. R.; BLYSTAD, D. R.; BOJKO, J.; BORTH, W. B.; BRADFUTE, S.; BREYTA, R.; BRIESE, T.; BROWN, P. A.; BROWN, J. K.; BUCHHOLZ, U. J.; BUCHMEIER, M. J.; ABUKREYEV, A.; BURT, F.; BÜTTNER, C.; CALISHER, C. H.; CAO, M.; CASAS, I.; CHANDRAN, K.; CHARREL, R. N.; CHENG, Q.; CHIAKI, Y.; CHIAPELLO, M.; CHOI, I. R.; CIUFO, M.; CLEGG, J. C. S.; CROZIER, I.; BÓ, E. D.; DE LA TORRE, J. C.; LAMBALLERIE, X. de; SWART, R. L. de; DEBAT, H.; DHEILLY, N. M.; DI CICCO, E.; DI PAOLA, N.; DI SERIO, F.; DIETZGEN, R. G.; DIGIARO, M.; DOLNIK, O.; DREBOT, M. A.; DREXLER, J. F.; DUNDON, W. G.; DUPREX, W. P.; DÜRRWALD, R.; DYE, J. M.; EASTON, A. J.; EBIHARA, H.; ELBEAINO, T.; ERGÜNAY, K.; FERGUSON, H. W.; FOOKS, A. R.; FORGIA, M.; FORMENTY, P. B. H.; FRÁNOVÁ, J.; ASTUA, J. de F.; FU, J.; FÜRL, S.; ZACHERT, S. G.; GĀO, G. F.; GARCÍA, M. L.; SASTRE, A. G.; GARRISON, A. R.; GASKIN, T.; GONZALE, J. P. J.; GRIFTHS, A.; GOLDBERG, T. L.; GROSCHUP, M. H.; GÜNTHER, S.; HALL, R. A.; HAMMOND, J.; HAN, O.; HEPOJOKI, J.; HEWSON, R.; HONG, J.; HONG, N.; HORIE, M.; HU, J. S.; HU, T.; HUGHES, H. R.; HÜTTNER, F.; HYNDMAN, T. H.; ILYAS, M.; JALKANEN, R.; JIĀNG, D.; JONSON, G. J.; JUNGLEN, S.; KADONO, F.; KAUKINEN, K. H.; KAWATE, M.; KLEMPA, B.; KLINGSTRÖM, J.; KOBINGER, G.; KOLONIUK, I.; KONDŌ, H.; KOONIN, V.; KRUPOVIC, M.; KUBOTA, K.; KURATH, G.; LAENEN, L.; LAMBERT, A. J.; LANGEVIN, S. L.; LEE, B.; LEFKOWITZ, E. J.; LI, L.; LEROY, E. M.; LI, S.; LÍ, J.; LIU, H.; LUKASHEVICH, I. S.; MAES, P.; SOUZA, W. M. de; MARKLEWITZ, M.; MARSHALL, S. H.; MARZANO, S. L.; MASSART, S.; MCCAULEY, J. W.; MELZER, M.; MILLER, K. M.; MING, T. J.; MIRAZIMI, A.; MORDECAI, G. J.; MÜHLBACH, H. P.; MÜHLBERGER, E.; NAIDU, R.; NATSUAKI, T.; NAVARRO, J. A.; NETESOV, S. Y V.; NEUMANN, G.; NOWOTNY, N.; NUNES, M. R. T.; VELARDE, A. O.; PALACIOS, G.; PALLÁS, V.; PÁLYI, B.; PAPA, A.; PARASKEVOPOULOU, S.; PARK, A. C.; PARRISH, C. R.; PATTERSON, D. A.; CORRÊA, A. P.; PAWESKA, J. T.; PAYNE, S.; PERACCHIO, C.; PÉREZ, D. R.; POSTLER, T. S.; QI, L.; RADOSHITZKY, S. R.; RESENDE, R. O.; REYES, C. A.; RIMA, B. K.; LUNA, G. R.; ROMANOWSKI, V.; ROTA, P.; RUBBENSTROTH, D.; RUBINO, L.; RUNSTADLER, J. A.; SABANADZOVIC, S.; SALL, A. A.; SALVATO, M. S.; SANG, R.; SASAYA, T.; SCHULZE, A. D.; SCHWEMMLE, M.; SHI, M.; SHÍ, X.; SHIMOMOTO, Y.; SHIRAKO, Y.; SIDDELL, S. G.; SIMMONDS, P.; SIRONI, M.; SMAGGHE, G.; SMITHER, S.; SONG, J. W.; SPANN, K.; SPENGLER, J. R.; STENGLEIN, M. D.; STONE, D. M.; SUGANO, J.; TABATA, A.; TAKADA, A.; TAKEUCHI, S.; TCHOUASSI, D. P.; TEFER, A.; TESH, R. B.; THORNBURG, N. J.; TOMITAKA, Y.; TOMONAGA, K.; TORDO, N.; TORTO, B.; TOWNER, J. S.; TSUDA, S.; TU, C.; TURINA, M.; TZANETAKIS, I. E.; UCHIDA, J.; USUGI, T.; VAIRA, A. M.; VALLINO, M.; VAN DEN HOOGEN, B.; VARSANI, A.; VASILAKIS, N.; VERBEEK, M.; BARGEN, S. V.; WADA, J.; WAHL, V.; WALKER, P. J.; WANG, L. F.; WANG, G.; WANG, Y.; WANG, Y.; WAQAS, M.; WÈI, T.; WEN, S.; WHITFELD, A. E.; WILLIAMS, J. V.; WOLF, Y. I.; WU, J.; XU, L.; YANAGISAWA, H.; YANG, C.; YANG, Z.; ZERBINI, F. M.; ZHAI, L.; ZHANG, Y. Z.; ZHANG, O.; ZHANG, J.; ZHANG, Z.; ZHOU, X. |
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Afiliação: |
JENS H. KUHN; SCOTT ADKINS; BERNARD R. AGWANDA; RIM AL KUBRUSLI; SERGEY V. ALKHOVSKY; GAYA K. AMARASINGHE; TATJANAAVSICZUPANC; MARÍA A. AYLLÓN; JUSTIN BAHL; ANNE BALKEMA BUSCHMANN; MATTHEW J. BALLINGER; CHRISTOPHER F. BASLER; SINA BAVARI; MARTIN BEER; NICOLAS BEJERMAN; ANDREW J. BENNETT; DENNIS A. BENTE; ÉRIC BERGERON; BRIAN H. BIRD; CAROL D. BLAIR; KIM R. BLASDELL; DAG RAGNAR BLYSTAD; JAMIE BOJKO; WAYNE B. BORTH; STEVEN BRADFUTE; RACHEL BREYTA; THOMAS BRIESE; PAUL A. BROWN; JUDITH K. BROWN; URSULA J. BUCHHOLZ; MICHAEL J. BUCHMEIER; ALEXANDER BUKREYEV; FELICITY BURT; CARMEN BÜTTNER; CHARLES H. CALISHER; MENGJI CAO; INMACULADA CASAS; KARTIK CHANDRAN; RÉMI N. CHARREL; QI CHENG; YUYA CHIAKI; MARCO CHIAPELLO; IL RYONG CHOI; MARINA CIUFO; J. CHRISTOPHER S. CLEGG; IAN CROZIER; ELENA DAL BÓ; JUAN CARLOS DE LA TORRE; XAVIER DE LAMBALLERIE; RIK L. DE SWART; HUMBERTO DEBAT; NOLWENN M. DHEILLY; EMILIANO DI CICCO; NICHOLAS DI PAOLA; FRANCESCO DI SERIO; RALF G. DIETZGEN; MICHELE DIGIARO; OLGA DOLNIK; MICHAEL A. DREBOT; J. FELIX DREXLER; WILLIAM G. DUNDON; W. PAUL DUPREX; RALF DÜRRWALD; JOHN M. DYE; ANDREW J. EASTON; HIDEKI EBIHARA; TOUFC ELBEAINO; KORAY ERGÜNAY; HUGH W. FERGUSON; ANTHONY R. FOOKS; MARCO FORGIA; PIERRE B. H. FORMENTY; JANA FRÁNOVÁ; JULIANA DE FREITAS ASTUA, CNPMF; JINGJING FU; STEPHANIE FÜRL; SELMA GAGO ZACHERT; GEORGE FÚ GĀO; MARÍA LAURA GARCÍA; ADOLFO GARCÍA SASTRE; AURA R. GARRISON; THOMAS GASKIN; JEAN PAUL J. GONZALE; ANTHONY GRIFTHS; TONY L. GOLDBERG; MARTIN H. GROSCHUP; STEPHAN GÜNTHER; ROY A. HALL; JOHN HAMMOND; ONG HAN; JUSSI HEPOJOKI; ROGER HEWSON; JIANG HONG; NI HONG; MASAYUKI HORIE; JOHN S. HU; TAO HU; HOLLY R. HUGHES; FLORIAN HÜTTNER; TIMOTHY H. HYNDMAN; M. ILYAS; RISTO JALKANEN; DÀOHÓNG JIĀNG; GILDA B. JONSON; SANDRA JUNGLEN; FUJIO KADONO; KARIA H. KAUKINEN; MICHAEL KAWATE; BORIS KLEMPA; JONAS KLINGSTRÖM; GARY KOBINGER; IGOR KOLONIUK; HIDEKI; EUGENE V. KOONIN; MART KRUPOVIC; KENJI KUBOTA; GAEL KURATH; LIES LAENEN; AMY J. LAMBERT; STANLEY L. LANGEVIN; BENHUR LEE; ELLIOT J. LEFKOWITZ; LONGHUI LI; ERIC M. LEROY; SHAORONG LI; JIÀNRÓNG LÍ; HUAZHEN LIU; IGOR S. LUKASHEVICH; PIET MAES; WILLIAM MARCIEL DE SOUZA; MARCO MARKLEWITZ; SERGIO H. MARSHALL; SHIN YI L. MARZANO; SEBASTIEN MASSART; JOHN W. MCCAULEY; MICHAEL MELZER; KRISTINA M. MILLER; TOBI J. MING; ALI MIRAZIMI; GIDEON J. MORDECAI; HANS PETER MÜHLBACH; ELKE MÜHLBERGER; RAYAPATI NAIDU; TOMOHIDE NATSUAKI; JOSÉ A. NAVARRO; SERGEY V. NETESOV; GABRIELE NEUMANN; NORBERT NOWOTNY; MÁRCIO R. T. NUNES; ALEJANDRO OLMEDO VELARDE; GUSTAVO PALACIOS; VICENTE PALLÁS; BERNADETT PÁLYI; ANNA PAPA; SOFA PARASKEVOPOULOU; ADAM C. PARK; COLIN R. PARRISH; DAVID A. PATTERSON; ALEX PAUVOLID CORRÊA; JANUSZ T. PAWESKA; SUSAN PAYNE; CARLOTTA PERACCHIO; DANIEL R. PÉREZ; THOMAS S. POSTLER; LIYING QI; SHELI R. RADOSHITZKY; RENATO O. RESENDE; CARINA A. REYES; BERTUS K. RIMA; GABRIEL ROBLES LUNA; VÍCTOR ROMANOWSKI; PAUL ROTA; DENNIS RUBBENSTROTH; LUISA RUBINO; JONATHAN A. RUNSTADLER; SEAD SABANADZOVIC; AMADOU ALPHA SALL; MARIA S. SALVATO; ROSEMARY SANG; TAKAHIDE SASAYA; ANGELA D. SCHULZE; MARTIN SCHWEMMLE; MANG SHI; XIÃOHÓNG SHÍ; YOSHIFUMI SHIMOMOTO; YUKIO SHIRAKO; STUART G. SIDDELL; PETER SIMMONDS; MANUELA SIRONI; GUY SMAGGHE; SOPHIE SMITHER; JIN WON SONG; KIRSTEN SPANN; JESSICA R. SPENGLER; MARK D. STENGLEIN; DAVID M. STONE; JARI SUGANO; AMY TABATA; AYATO TAKADA; SHIGEHARU TAKEUCHI; DAVID P. TCHOUASSI; AMY TEFER; ROBERT B. TESH; NATALIE J. THORNBURG; YASUHIRO TOMITAKA; KEIZO TOMONAGA; NOEL TORDO; BALDWYN TORTO; JONATHAN S. TOWNER; SHINYA TSUDA; CHANGCHUN TU; MASSIMO TURINA; IOANNIS E. TZANETAKIS; JANICE UCHIDA; TOMIO USUGI; ANNA MARIA VAIRA; MARTA VALLINO; BERNADETTE VAN DEN HOOGEN; ARVIND VARSANI; NIKOS VASILAKIS; MARTIN VERBEEK; SUSANNE VON BARGEN; JIRO WADA; VICTORIA WAHL; PETER J. WALKER; LIN FA WANG; GUOPING WANG; YANXIANG WANG; YAQIN WANG; MUHAMMAD WAQAS; TÀIYÚN WÈI; SHAOHUA WEN; ANNA E. WHITFELD; JOHN V. WILLIAMS; YURI I. WOLF; JIANGXIANG WU; LEI XU; HIRONOBU YANAGISAWA; CAIXIA YANG; ZUOKUN YANG; F. MURILO ZERBINI; LIFENG ZHAI; YONG ZHEN ZHANG; ONG ZHANG; JINGUO ZHANG; ZHE ZHANG; XUEPING ZHOU. |
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Título: |
2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirale. |
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Ano de publicação: |
2021 |
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Fonte/Imprenta: |
Archives of Virology, August, 2021. |
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Idioma: |
Inglês |
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Thesagro: |
Taxonomia. |
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Categoria do assunto: |
-- |
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Marc: |
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700 1 $aWEN, S.
700 1 $aWHITFELD, A. E.
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700 1 $aWU, J.
700 1 $aXU, L.
700 1 $aYANAGISAWA, H.
700 1 $aYANG, C.
700 1 $aYANG, Z.
700 1 $aZERBINI, F. M.
700 1 $aZHAI, L.
700 1 $aZHANG, Y. Z.
700 1 $aZHANG, O.
700 1 $aZHANG, J.
700 1 $aZHANG, Z.
700 1 $aZHOU, X.
773 $tArchives of Virology, August, 2021.
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Registro original: |
Embrapa Mandioca e Fruticultura (CNPMF) |
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Biblioteca |
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Tipo/Formato |
Classificação |
Cutter |
Registro |
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Registro Completo
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Biblioteca(s): |
Embrapa Café. |
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Data corrente: |
09/01/2023 |
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Data da última atualização: |
07/12/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 1 |
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Autoria: |
MENDONÇA, H. C.; PEREIRA, L. F. P.; SANTOS, J. V. M. dos; MEDA, A. R.; SANT?ANA, G. C. |
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Afiliação: |
HEITOR CALUX MENDONÇA, UNIVERSIDADE ESTADUAL DE LONDRINA; LUIZ FILIPE PROTASIO PEREIRA, CNPCa; JOÃO VITOR MALDONADO DOS SANTOS, TROPICAL MELHORAMENTO E GENÉTICA; ANDERSON ROTTER MEDA, TROPICAL MELHORAMENTO E GENÉTICA; GUSTAVO CÉSAR SANT'ANA, TROPICAL MELHORAMENTO E GENÉTICA. |
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Título: |
Genetic diversity and selection footprints in the genome of brazilian soybean cultivars. |
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Ano de publicação: |
2022 |
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Fonte/Imprenta: |
Frontiers in Plant Science, v. 13, 2022. |
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Páginas: |
12 p. |
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Idioma: |
Inglês |
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Conteúdo: |
Although Brazil is currently the largest soybean producer in the world, only a small number of studies have analyzed the genetic diversity of Brazilian soybean. These studies have shown the existence of a narrow genetic base. The objectives of this work were to analyze the population structure and genetic diversity, and to identify selection signatures in the genome of soybean germplasms from different companies in Brazil. A panel consisting of 343 soybean lines from Brazil, North America, and Asia was genotyped using genotyping by sequencing (GBS). Population structure was assessed by Bayesian and multivariate approaches. Genetic diversity was analyzed using metrics such as the fixation index, nucleotide diversity, genetic dissimilarity, and linkage disequilibrium. The software BayeScan was used to detect selection signatures between Brazilian and Asian accessions as well as among Brazilian germplasms. Region of origin, company of origin, and relative maturity group (RMG) all had a significant influence on population structure. Varieties belonging to the same company and especially to the same RMG exhibited a high level of genetic similarity. This result was exacerbated among early maturing accessions. Brazilian soybean showed significantly lower genetic diversity when compared to Asian accessions. This was expected, because the crop?s region of origin is its main genetic diversity reserve. We identified 7 genomic regions under selection between the Brazilian and Asian accessions, and 27 among Brazilian varieties developed by different companies. Associated with these genomic regions, we found 96 quantitative trait loci (QTLs) for important soybean breeding traits such as flowering, maturity, plant architecture, productivity components, pathogen resistance, and seed composition. Some of the QTLs associated with the markers under selection have genes of great importance to soybean?s regional adaptation. The results reported herein allowed to expand the knowledge about the organization of the genetic variability of the Brazilian soybean germplasm. Furthermore, it was possible to identify genomic regions under selection possibly associated with the adaptation of soybean to Brazilian environments. MenosAlthough Brazil is currently the largest soybean producer in the world, only a small number of studies have analyzed the genetic diversity of Brazilian soybean. These studies have shown the existence of a narrow genetic base. The objectives of this work were to analyze the population structure and genetic diversity, and to identify selection signatures in the genome of soybean germplasms from different companies in Brazil. A panel consisting of 343 soybean lines from Brazil, North America, and Asia was genotyped using genotyping by sequencing (GBS). Population structure was assessed by Bayesian and multivariate approaches. Genetic diversity was analyzed using metrics such as the fixation index, nucleotide diversity, genetic dissimilarity, and linkage disequilibrium. The software BayeScan was used to detect selection signatures between Brazilian and Asian accessions as well as among Brazilian germplasms. Region of origin, company of origin, and relative maturity group (RMG) all had a significant influence on population structure. Varieties belonging to the same company and especially to the same RMG exhibited a high level of genetic similarity. This result was exacerbated among early maturing accessions. Brazilian soybean showed significantly lower genetic diversity when compared to Asian accessions. This was expected, because the crop?s region of origin is its main genetic diversity reserve. We identified 7 genomic regions under selection between the Brazilian and Asian acce... Mostrar Tudo |
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Thesaurus NAL: |
Genetic variance; Genome; Soybeans. |
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Categoria do assunto: |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1150814/1/Genetic-Diversity-and-Selection.pdf
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Marc: |
LEADER 02845naa a2200217 a 4500
001 2150814
005 2023-12-07
008 2022 bl uuuu u00u1 u #d
100 1 $aMENDONÇA, H. C.
245 $aGenetic diversity and selection footprints in the genome of brazilian soybean cultivars.$h[electronic resource]
260 $c2022
300 $a12 p.
520 $aAlthough Brazil is currently the largest soybean producer in the world, only a small number of studies have analyzed the genetic diversity of Brazilian soybean. These studies have shown the existence of a narrow genetic base. The objectives of this work were to analyze the population structure and genetic diversity, and to identify selection signatures in the genome of soybean germplasms from different companies in Brazil. A panel consisting of 343 soybean lines from Brazil, North America, and Asia was genotyped using genotyping by sequencing (GBS). Population structure was assessed by Bayesian and multivariate approaches. Genetic diversity was analyzed using metrics such as the fixation index, nucleotide diversity, genetic dissimilarity, and linkage disequilibrium. The software BayeScan was used to detect selection signatures between Brazilian and Asian accessions as well as among Brazilian germplasms. Region of origin, company of origin, and relative maturity group (RMG) all had a significant influence on population structure. Varieties belonging to the same company and especially to the same RMG exhibited a high level of genetic similarity. This result was exacerbated among early maturing accessions. Brazilian soybean showed significantly lower genetic diversity when compared to Asian accessions. This was expected, because the crop?s region of origin is its main genetic diversity reserve. We identified 7 genomic regions under selection between the Brazilian and Asian accessions, and 27 among Brazilian varieties developed by different companies. Associated with these genomic regions, we found 96 quantitative trait loci (QTLs) for important soybean breeding traits such as flowering, maturity, plant architecture, productivity components, pathogen resistance, and seed composition. Some of the QTLs associated with the markers under selection have genes of great importance to soybean?s regional adaptation. The results reported herein allowed to expand the knowledge about the organization of the genetic variability of the Brazilian soybean germplasm. Furthermore, it was possible to identify genomic regions under selection possibly associated with the adaptation of soybean to Brazilian environments.
650 $aGenetic variance
650 $aGenome
650 $aSoybeans
700 1 $aPEREIRA, L. F. P.
700 1 $aSANTOS, J. V. M. dos
700 1 $aMEDA, A. R.
700 1 $aSANT?ANA, G. C.
773 $tFrontiers in Plant Science$gv. 13, 2022.
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